5UOP	Transferase Dna Inhibitor	date	Feb 01, 2017
title	Crystal Structure Of The Prototype Foamy Virus Intasome With Pyridinone Aminal Inhibitor (Compound 18)
authors	D.J.Klein
compound		source
Molecule: Integrase Chain: A, B Synonym: Pr125pol Ec: 2.7.7.- Engineered: Yes		Organism_scientific: Human Spumaretrovirus Organism_common: Sfvcpz(Hu) Organism_taxid: 11963 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nucleotide Preprocessed Pfv Donor Dna (Non-Transf Strand); Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Human Spumaretrovirus Organism_taxid: 11963
Molecule: Nucleotide Preprocessed Pfv Donor Dna (Transferre Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Human Spumaretrovirus Organism_taxid: 11963
symmetry	Space Group: P 41 21 2	R_factor 0.183 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 158.818 158.818 123.797 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.85 Å
ligand	8G4, GOL, MG, SO4, ZN	enzyme	Transferase E.C.2.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery and optimization of 2-pyridinone aminal integrase strand transfer inhibitors for the treatment of HIV., Schreier JD, Embrey MW, Raheem IT, Barbe G, Campeau LC, Dubost D, McCabe Dunn J, Grobler J, Hartingh TJ, Hazuda DJ, Klein D, Miller MD, Moore KP, Nguyen N, Pajkovic N, Powell DA, Rada V, Sanders JM, Sisko J, Steele TG, Wai J, Walji A, Xu M, Coleman PJ, Bioorg Med Chem Lett. 2017 Feb 20. pii: S0960-894X(17)30172-5. doi:, 10.1016/j.bmcl.2017.02.039. PMID:28285916

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk] Biological Unit Coordinates (5uop.pdb1.gz) 211 Kb LPC: Ligand-Protein Contacts for 5UOP CSU: Contacts of Structural Units for 5UOP Structure Factors (1294 Kb) Retrieve 5UOP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UOP from S2C, [Save to disk] Re-refined 5uop structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UOP in 3D

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Visual 3D analysis of 5UOP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5uop_B] [5uop_A] [5uop] [5uop_D] [5uop_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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