5UP3	Transferase Transferase Inhibitor	date	Feb 01, 2017
title	Structure-Based Design Of Ask1 Inhibitors As Potential First Agents For Heart Failure
authors	D.R.Dougan
compound		source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 5 Chain: A, B Fragment: Unp Residues 670-940 Synonym: Apoptosis Signal-Regulating Kinase 1,Ask-1,Mapker Kinase 5,Mekk 5; Ec: 2.7.11.25 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Map3k5, Ask1, Mapkkk5, Mekk5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2(De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Peh8
symmetry	Space Group: P 65 2 2	R_factor 0.242 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.790 78.790 431.367 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.95 Å
ligand	8GS	enzyme	Transferase E.C.2.7.11.25 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-Based Design of ASK1 Inhibitors as Potential Agents for Heart Failure., Lanier M, Pickens J, Bigi SV, Bradshaw-Pierce EL, Chambers A, Cheruvallath ZS, Cole D, Dougan DR, Ermolieff J, Gibson T, Halkowycz P, Hirokawa A, Ivetac A, Miura J, Nunez E, Sabat M, Tyhonas J, Wang H, Wang X, Swann S, ACS Med Chem Lett. 2017 Feb 8;8(3):316-320. doi: 10.1021/acsmedchemlett.6b00481. , eCollection 2017 Mar 9. PMID:28337323

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk] Biological Unit Coordinates (5up3.pdb1.gz) 89 Kb Biological Unit Coordinates (5up3.pdb2.gz) 84 Kb LPC: Ligand-Protein Contacts for 5UP3 CSU: Contacts of Structural Units for 5UP3 Structure Factors (517 Kb) Retrieve 5UP3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UP3 from S2C, [Save to disk] Re-refined 5up3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UP3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5UP3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5up3_B] [5up3_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5UP3

Community annotation for 5UP3 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---