5UPP Lyase date Feb 03, 2017
title Crystal Structure Of Human Fumarate Hydratase
authors V.L.Rangel, M.A.Ajalla, J.K.Rustiguel, R.A.Pereira De Padua, M.C
compound source
Molecule: Fumarate Hydratase, Mitochondrial
Chain: A, B
Synonym: Fumarase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fh
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 2 2 21
R_factor 0.156 R_Free 0.190
length a length b length c angle alpha angle beta angle gamma
125.434 148.006 129.761 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
enzyme Lyase E.C. BRENDA
A, B

Primary referenceStructural, biochemical and biophysical characterization of recombinant human fumarate hydratase., Ajalla Aleixo MA, Rangel VL, Rustiguel JK, de Padua RAP, Nonato MC, FEBS J. 2019 May;286(10):1925-1940. doi: 10.1111/febs.14782. Epub 2019 Mar 7. PMID:30761759
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (451 Kb) [Save to disk]
  • Biological Unit Coordinates (5upp.pdb1.gz) 884 Kb
  • CSU: Contacts of Structural Units for 5UPP
  • Structure Factors (3105 Kb)
  • Retrieve 5UPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UPP from S2C, [Save to disk]
  • View 5UPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UPP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5upp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5upp_B] [5upp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UPP
  • Community annotation for 5UPP at PDBWiki (http://pdbwiki.org)

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