5UPZ		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	8HD, CL, GOL, NA	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	Design of novel HIV-1 protease inhibitors incorporating isophthalamide-derived P2-P3 ligands: Synthesis, biological evaluation and X-ray structural studies of inhibitor-HIV-1 protease complex., Ghosh AK, Brindisi M, Nyalapatla PR, Takayama J, Ella-Menye JR, Yashchuk S, Agniswamy J, Wang YF, Aoki M, Amano M, Weber IT, Mitsuya H, Bioorg Med Chem. 2017 Apr 9. pii: S0968-0896(17)30731-9. doi:, 10.1016/j.bmc.2017.04.005. PMID:28434781

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (5upz.pdb1.gz) 79 Kb LPC: Ligand-Protein Contacts for 5UPZ CSU: Contacts of Structural Units for 5UPZ Structure Factors (414 Kb) Retrieve 5UPZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UPZ from S2C, [Save to disk] Re-refined 5upz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UPZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5upz] [5upz_A] [5upz_B] SWISS-PROT database:

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