5URO Hydrolase date Feb 11, 2017
title Structure Of A Soluble Epoxide Hydrolase Identified In Trich Reesei
authors C.Wilson, G.De Oliveira, F.Chambergo, M.V.B.Dias
compound source
Molecule: Predicted Protein
Chain: A
Engineered: Yes
 Organism_scientific: Hypocrea Jecorina (Strain Qm6a)
Organism_taxid: 431241
Strain: Qm6a
Gene: Triredraft_53220
Expression_system: Escherichia Coli 55989
Expression_system_taxid: 585055
symmetry Space Group: P 2 21 21
R_factor 0.183 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.427 78.281 87.372 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 8LD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a soluble epoxide hydrolase identified in Trichoderma reesei., Wilson C, De Oliveira GS, Adriani PP, Chambergo FS, Dias MVB, Biochim Biophys Acta. 2017 Aug;1865(8):1039-1045. doi:, 10.1016/j.bbapap.2017.05.004. Epub 2017 May 11. PMID:28502798
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5uro.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 5URO
  • CSU: Contacts of Structural Units for 5URO
  • Structure Factors (6290 Kb)
  • Retrieve 5URO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5URO from S2C, [Save to disk]
  • Re-refined 5uro structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5URO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5URO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uro_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5URO
  • Community annotation for 5URO at PDBWiki (http://pdbwiki.org)

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