5URZ Signaling Protein date Feb 13, 2017
title Crystal Structure Of Frizzled 5 Crd In Complex With Bog
authors S.Mukund, A.H.Nile, K.Stanger, R.N.Hannoush, W.Wang
compound source
Molecule: Frizzled-5
Chain: A, B
Synonym: Hfz5,Fze5
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fzd5, C2orf31
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 31 2 1
R_factor 0.180 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.051 123.051 46.870 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand BOG, FUC, NAG enzyme
Primary referenceUnsaturated fatty acyl recognition by Frizzled receptors mediates dimerization upon Wnt ligand binding., Nile AH, Mukund S, Stanger K, Wang W, Hannoush RN, Proc Natl Acad Sci U S A. 2017 Apr 4. pii: 201618293. doi:, 10.1073/pnas.1618293114. PMID:28377511
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (5urz.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 5URZ
  • CSU: Contacts of Structural Units for 5URZ
  • Structure Factors (440 Kb)
  • Retrieve 5URZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5URZ from S2C, [Save to disk]
  • Re-refined 5urz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5URZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5URZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5urz_B] [5urz_A] [5urz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5URZ
  • Community annotation for 5URZ at PDBWiki (http://pdbwiki.org)

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