5UUH	Hydrolase Dna Antibiotic	date	Feb 16, 2017
title	Bacillus Cereus Dna Glycosylase Alkd Bound To A Yatakemycin- Nucleobase Adduct And Dna Containing A Fluorinated Abasic S Product Complex)
authors	E.A.Mullins, B.F.Eichman
compound		source
Molecule: Dna-7-Methylguanine Glycosylase Chain: A Synonym: Alkd Engineered: Yes		Organism_scientific: Bacillus Cereus Organism_taxid: 1396 Atcc: 14579 Gene: Bcere0015_46090 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333 Expression_system_strain: Hms174(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbg103
Molecule: Dna (5'-D(Apgpgpcpap(Orf)Papgpc)-3') Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Tpgpcptptptpgpcpc)-3') Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: C 1 2 1	R_factor 0.141 R_Free 0.173
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.396 55.748 48.124 90.00 111.18 90.00
method	X-Ray Diffraction	resolution	1.57 Å
ligand	CA, RF5, YTA	enzyme
Primary reference	Toxicity and repair of DNA adducts produced by the natural product yatakemycin., Mullins EA, Shi R, Eichman BF, Nat Chem Biol. 2017 Jul 24. doi: 10.1038/nchembio.2439. PMID:28759018

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk] Biological Unit Coordinates (5uuh.pdb1.gz) 141 Kb LPC: Ligand-Protein Contacts for 5UUH CSU: Contacts of Structural Units for 5UUH Structure Factors (289 Kb) Retrieve 5UUH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UUH from S2C, [Save to disk] Re-refined 5uuh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UUH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5UUH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5uuh_C] [5uuh_B] [5uuh_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5UUH

Community annotation for 5UUH at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---