5UUL Apoptosis date Feb 17, 2017
title Human Bfl-1 In Complex With Puma Bh3
authors J.M.Jenson, R.A.Grant, A.E.Keating
compound source
Molecule: Bcl-2-Related Protein A1
Chain: A
Fragment: Unp Residues 1-151
Synonym: Bcl-2-Like Protein 5,Bcl2-L-5,Hemopoietic-Specific Response Protein,Protein Bfl-1,Protein Grs;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl2a1, Bcl2l5, Bfl1, Grs, Hbpa1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Bcl-2-Binding Component 3
Chain: B
Fragment: Unp Residues 132-154
Synonym: Jfy-1,P53 Up-Regulated Modulator Of Apoptosis
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.133 R_Free 0.155
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.213 43.428 47.384 90.00 114.39 90.00
method X-Ray Diffractionresolution 1.33 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceEpistatic mutations in PUMA BH3 drive an alternate binding mode to potently and selectively inhibit anti-apoptotic Bfl-1., Jenson JM, Ryan JA, Grant RA, Letai A, Keating AE, Elife. 2017 Jun 8;6. pii: e25541. doi: 10.7554/eLife.25541. PMID:28594323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5uul.pdb1.gz) 97 Kb
  • CSU: Contacts of Structural Units for 5UUL
  • Structure Factors (266 Kb)
  • Retrieve 5UUL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UUL from S2C, [Save to disk]
  • Re-refined 5uul structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UUL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UUL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5uul from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uul_B] [5uul_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UUL
  • Community annotation for 5UUL at PDBWiki (http://pdbwiki.org)

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