5UUP Apoptosis date Feb 17, 2017
title Human Bfl-1 Covalently Cross-Linked To An Electrophilic Vari Bfl-1-Specific Selected Peptide
authors J.M.Jenson, R.A.Grant, A.E.Keating
compound source
Molecule: Bcl-2-Related Protein A1
Chain: A
Fragment: Unp Residues 1-151
Synonym: Bcl-2-Like Protein 5,Bcl2-L-5,Hemopoietic-Specific Response Protein,Protein Bfl-1,Protein Grs;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl2a1, Bcl2l5, Bfl1, Grs, Hbpa1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Bfl-1-Specific Selected Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.395 43.493 47.068 90.00 114.78 90.00
method X-Ray Diffractionresolution 1.73 Å
ligand AKR, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEpistatic mutations in PUMA BH3 drive an alternate binding mode to potently and selectively inhibit anti-apoptotic Bfl-1., Jenson JM, Ryan JA, Grant RA, Letai A, Keating AE, Elife. 2017 Jun 8;6. pii: e25541. doi: 10.7554/eLife.25541. PMID:28594323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5uup.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 5UUP
  • CSU: Contacts of Structural Units for 5UUP
  • Structure Factors (384 Kb)
  • Retrieve 5UUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UUP from S2C, [Save to disk]
  • Re-refined 5uup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UUP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uup_A] [5uup_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UUP
  • Community annotation for 5UUP at PDBWiki (http://pdbwiki.org)

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