5UW7 Lyase date Feb 20, 2017
title Pcy1 Y481f Variant In Complex With Follower Peptide
authors J.R.Chekan, S.K.Nair
compound source
Molecule: Peptide Cyclase 1
Chain: A, B
Engineered: Yes
 Organism_scientific: Vaccaria Hispanica
Organism_taxid: 39387
Gene: Pcy1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Presegetalin A1
Chain: C, D
Fragment: Unp Residues 14-32
Engineered: Yes
Synthetic: Yes
Organism_scientific: Vaccaria Hispanica
Organism_taxid: 39387
symmetry Space Group: P 1 2 1
R_factor 0.236 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.947 59.629 134.164 90.00 93.12 90.00
method X-Ray Diffractionresolution 2.37 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]
  • Biological Unit Coordinates (5uw7.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (5uw7.pdb2.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 5UW7
  • CSU: Contacts of Structural Units for 5UW7
  • Structure Factors (2362 Kb)
  • Retrieve 5UW7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UW7 from S2C, [Save to disk]
  • Re-refined 5uw7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UW7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UW7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uw7_D] [5uw7_C] [5uw7_B] [5uw7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UW7
  • Community annotation for 5UW7 at PDBWiki (http://pdbwiki.org)

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