5UWG Signaling Protein date Feb 21, 2017
title The Crystal Structure Of Fz4-Crd In Complex With Palmitoleic
authors J.Ke, Z.J.Debruine, X.Gu, J.S.Brunzelle, H.E.Xu, K.Melcher
compound source
Molecule: Frizzled-4
Chain: A, B
Fragment: Cysteine Rich Domain (Unp Residues 40-164)
Synonym: Hfz4,Fze4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fzd4
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Plasmid
symmetry Space Group: C 2 2 21
R_factor 0.244 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.452 109.373 76.789 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.56 Å
ligand NAG, PAM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceWnt5a promotes Frizzled-4 signalosome assembly by stabilizing cysteine-rich domain dimerization., DeBruine ZJ, Ke J, Harikumar KG, Gu X, Borowsky P, Williams BO, Xu W, Miller LJ, Xu HE, Melcher K, Genes Dev. 2017 May 1;31(9):916-926. doi: 10.1101/gad.298331.117. Epub 2017 May, 25. PMID:28546512
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (5uwg.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (5uwg.pdb2.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 5UWG
  • CSU: Contacts of Structural Units for 5UWG
  • Structure Factors (312 Kb)
  • Retrieve 5UWG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UWG from S2C, [Save to disk]
  • Re-refined 5uwg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UWG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UWG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uwg_A] [5uwg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UWG
  • Community annotation for 5UWG at PDBWiki (http://pdbwiki.org)

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