5UWS Protein Transport date Feb 21, 2017
title Crystal Structure Of X11l2 Nes Peptide In Complex With Crm1-
authors H.Y.J.Fung, Y.M.Chook
compound source
Molecule: Gtp-Binding Nuclear Protein Ran
Chain: A
Synonym: Androgen Receptor-Associated Protein 24, Gtpase Ra Like Protein Tc4, Ras-Related Nuclear Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ran, Ara24, Oksw-Cl.81
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15

Molecule: Ran-Specific Gtpase-Activating Protein 1
Chain: B
Synonym: Chromosome Stability Protein 20, Perinuclear Array Protein, Ran-Binding Protein 1, Ranbp1;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Yrb1, Cst20, Htn1, Sfo1, Ydr002w, Yd8119.08
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t3-Tev

Molecule: Exportin-1,Exportin-1
Chain: C
Synonym: Chromosome Region Maintenance Protein 1, Karyopher
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Crm1, Kap124, Xpo1, Ygr218w, G8514
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t3-Tev

Molecule: Amyloid Beta A4 Precursor Protein-Binding Family 3;
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: X11l2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmal-Tev
symmetry Space Group: P 43 21 2
R_factor 0.188 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.646 106.646 304.628 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand GNP, GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • intracellular transport of v...

  • B


    C
  • nuclear import signal recept...


  • Primary referenceNuclear export receptor CRM1 recognizes diverse conformations in nuclear export signals., Fung HY, Fu SC, Chook YM, Elife. 2017 Mar 10;6. pii: e23961. doi: 10.7554/eLife.23961. PMID:28282025
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (699 Kb) [Save to disk]
  • Biological Unit Coordinates (5uws.pdb1.gz) 689 Kb
  • LPC: Ligand-Protein Contacts for 5UWS
  • CSU: Contacts of Structural Units for 5UWS
  • Structure Factors (2417 Kb)
  • Retrieve 5UWS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UWS from S2C, [Save to disk]
  • Re-refined 5uws structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UWS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UWS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5uws from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uws_B] [5uws_A] [5uws_C] [5uws_D] [5uws]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UWS
  • Community annotation for 5UWS at PDBWiki (http://pdbwiki.org)

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