5UWW	Protein Transport	date	Feb 21, 2017
title	Crystal Structure Of Deaf1 Peptide In Complex With Crm1 K579 Ran-Ranbp1
authors	H.Y.J.Fung, Y.M.Chook
compound		source
Molecule: Gtp-Binding Nuclear Protein Ran Chain: A Synonym: Androgen Receptor-Associated Protein 24, Gtpase Ra Like Protein Tc4, Ras-Related Nuclear Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ran, Ara24, Oksw-Cl.81 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15
Molecule: Ran-Specific Gtpase-Activating Protein 1 Chain: B Synonym: Chromosome Stability Protein 20, Perinuclear Array Protein, Ran-Binding Protein 1, Ranbp1; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Yrb1, Cst20, Htn1, Sfo1, Ydr002w, Yd8119.08 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t3-Tev
Molecule: Exportin-1 Chain: C Synonym: Chromosome Region Maintenance Protein 1, Karyopher Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Crm1, Kap124, Xpo1, Ygr218w, G8514 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t3-Tev
Molecule: Deformed Epidermal Autoregulatory Factor 1 Homolo Chain: D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Deaf1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmal-Tev
symmetry	Space Group: P 43 21 2	R_factor 0.186 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.043 106.043 304.207 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	GNP, GOL, MG	enzyme
Gene Ontology	Chain Function Process Component A intracellular transport of v... B C nuclear import signal recept...
Primary reference	Nuclear export receptor CRM1 recognizes diverse conformations in nuclear export signals., Fung HY, Fu SC, Chook YM, Elife. 2017 Mar 10;6. pii: e23961. doi: 10.7554/eLife.23961. PMID:28282025

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (680 Kb) [Save to disk] Biological Unit Coordinates (5uww.pdb1.gz) 671 Kb LPC: Ligand-Protein Contacts for 5UWW CSU: Contacts of Structural Units for 5UWW Structure Factors (3206 Kb) Retrieve 5UWW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UWW from S2C, [Save to disk] Re-refined 5uww structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UWW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5UWW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5uww_B] [5uww_C] [5uww_A] [5uww_D] [5uww] SWISS-PROT database: Domain organization of by SWISSPFAM

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