5UZ0 Transferase, Hydrolase date Feb 24, 2017
title Crystal Structure Of Aicarft Bound To An Antifolate
authors S.Atwell, Y.Wang, K.R.Fales, D.Clawson, J.Wang
compound source
Molecule: Bifunctional Purine Biosynthesis Protein Purh
Chain: A, B, C, D
Ec: 2.1.2.3,3.5.4.10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atic, Purh, Oksw-Cl.86
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.202 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.797 105.121 105.646 113.48 99.42 95.52
method X-Ray Diffractionresolution 1.79 Å
ligand 8US, AMZ, MG enzyme Transferase E.C.2.1.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDiscovery of N-(6-Fluoro-1-oxo-1,2-dihydroisoquinolin-7-yl)-5-[(3R)-3-hydroxypyrrolidin-1-yl]t hiophene-2-sulfonamide (LSN 3213128), a Potent and Selective Nonclassical Antifolate Aminoimidazole-4-carboxamide Ribonucleotide Formyltransferase (AICARFT) Inhibitor Effective at Tumor Suppression in a Cancer Xenograft Model., Fales KR, Njoroge FG, Brooks HB, Thibodeaux S, Torrado A, Si C, Toth JL, Mc Cowan JR, Roth KD, Thrasher KJ, Frimpong K, Lee MR, Dally RD, Shepherd TA, Durham TB, Margolis BJ, Wu Z, Wang Y, Atwell S, Wang J, Hui YH, Meier TI, Konicek SA, Geeganage S, J Med Chem. 2017 Dec 14;60(23):9599-9616. doi: 10.1021/acs.jmedchem.7b01046. Epub, 2017 Nov 9. PMID:29072452
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (376 Kb) [Save to disk]
  • Biological Unit Coordinates (5uz0.pdb1.gz) 188 Kb
  • Biological Unit Coordinates (5uz0.pdb2.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 5UZ0
  • CSU: Contacts of Structural Units for 5UZ0
  • Structure Factors (2044 Kb)
  • Retrieve 5UZ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UZ0 from S2C, [Save to disk]
  • View 5UZ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UZ0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uz0_C] [5uz0_A] [5uz0_D] [5uz0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UZ0
  • Community annotation for 5UZ0 at PDBWiki (http://pdbwiki.org)

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