5V0N	Hydrolase Hydrolase Inhibitor	date	Feb 28, 2017
title	Bace1 In Complex With Inhibitor 5g
authors	A.Mesecar, A.Ghosh, Y.C.Yen
compound		source
Molecule: Beta-Secretase 1 Chain: A, B, C Fragment: Unp Residues 14-454 Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2; Ec: 3.4.23.46 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bace1, Bace, Kiaa1149 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.161 R_Free 0.202
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.040 103.545 99.765 90.00 104.59 90.00
method	X-Ray Diffraction	resolution	2.16 Å
ligand	8W4, GOL, SO4, URE	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Design, synthesis, and X-ray structural studies of BACE-1 inhibitors containing substituted 2-oxopiperazines as P1'-P2' ligands., Ghosh AK, Brindisi M, Yen YC, Cardenas EL, Ella-Menye JR, Kumaragurubaran N, Huang X, Tang J, Mesecar AD, Bioorg Med Chem Lett. 2017 Apr 8. pii: S0960-894X(17)30369-4. doi:, 10.1016/j.bmcl.2017.04.011. PMID:28427814

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk] Biological Unit Coordinates (5v0n.pdb1.gz) 68 Kb Biological Unit Coordinates (5v0n.pdb2.gz) 69 Kb Biological Unit Coordinates (5v0n.pdb3.gz) 69 Kb LPC: Ligand-Protein Contacts for 5V0N CSU: Contacts of Structural Units for 5V0N Structure Factors (879 Kb) Retrieve 5V0N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5V0N from S2C, [Save to disk] Re-refined 5v0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5V0N in 3D

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Visual 3D analysis of 5V0N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5v0n_B] [5v0n_C] [5v0n] [5v0n_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5V0N

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