5V1K date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5BU, 8RJ enzyme
Primary referenceChirality Dependent Potency Enhancement and Structural Impact of Glycol Nucleic Acid Modification on siRNA., Schlegel MK, Foster DJ, Kel'in AV, Zlatev I, Bisbe A, Jayaraman M, Lackey JG, Rajeev KG, Charisse K, Harp J, Pallan PS, Maier MA, Egli M, Manoharan M, J Am Chem Soc. 2017 Jun 28;139(25):8537-8546. doi: 10.1021/jacs.7b02694. Epub, 2017 Jun 19. PMID:28570818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (5v1k.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 5V1K
  • CSU: Contacts of Structural Units for 5V1K
  • Structure Factors (241 Kb)
  • Retrieve 5V1K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V1K from S2C, [Save to disk]
  • Re-refined 5v1k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5V1K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v1k_A] [5v1k_B]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science