5V1M Hydrolase date Mar 02, 2017
title Structure Of Human Usb1 With Uridine 5'-Monophosphate
authors E.J.Montemayor, A.L.Didychuk, S.E.Butcher
compound source
Molecule: U6 Snrna Phosphodiesterase
Chain: A
Fragment: Unp Residues 79-205
Synonym: Husb1
Ec: 3.1.4.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usb1, C16orf57
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.159 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.512 53.219 46.638 90.00 107.04 90.00
method X-Ray Diffractionresolution 1.47 Å
ligand CL, GOL, U5P enzyme Hydrolase E.C.3.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUsb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities., Didychuk AL, Montemayor EJ, Carrocci TJ, DeLaitsch AT, Lucarelli SE, Westler WM, Brow DA, Hoskins AA, Butcher SE, Nat Commun. 2017 Sep 8;8(1):497. doi: 10.1038/s41467-017-00484-w. PMID:28887445
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (5v1m.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 5V1M
  • CSU: Contacts of Structural Units for 5V1M
  • Structure Factors (795 Kb)
  • Retrieve 5V1M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V1M from S2C, [Save to disk]
  • View 5V1M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V1M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v1m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V1M
  • Community annotation for 5V1M at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science