5V3M Dna Binding Protein Dna date Mar 07, 2017
title Mousezfp568-Znf1-11 In Complex With Dna
authors A.Patel, X.Cheng
compound source
Molecule: Dna (28-Mer)
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: Dna (28-Mer)
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: Zinc Finger Protein 568
Chain: C
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Znf568, Chato, Zfp568
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: C 2 2 21
R_factor 0.213 R_Free 0.253
length a length b length c angle alpha angle beta angle gamma
35.954 92.758 353.667 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.09 Å
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (5v3m.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 5V3M
  • CSU: Contacts of Structural Units for 5V3M
  • Structure Factors (806 Kb)
  • Retrieve 5V3M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V3M from S2C, [Save to disk]
  • View 5V3M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V3M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5v3m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v3m_A] [5v3m_C] [5v3m_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V3M
  • Community annotation for 5V3M at PDBWiki (http://pdbwiki.org)

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