5V5L Immune System date Mar 14, 2017
title Crystal Structure Of Hla-B5801 Complex With Hiv-1 Gag Deriv Tw10
authors X.Li, J.H.Wang
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-58 Alph
Chain: A, C
Synonym: Bw-58,Mhc Class I Antigen B58
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B, Hlab
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Beta-2-Microglobulin
Chain: B, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Tw10
Chain: E, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.148 85.632 158.645 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
D, B
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  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (5v5l.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (5v5l.pdb2.gz) 70 Kb
  • CSU: Contacts of Structural Units for 5V5L
  • Structure Factors (1644 Kb)
  • Retrieve 5V5L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V5L from S2C, [Save to disk]
  • Re-refined 5v5l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5V5L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V5L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v5l_E] [5v5l_B] [5v5l_C] [5v5l_A] [5v5l_D] [5v5l_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V5L
  • Community annotation for 5V5L at PDBWiki (http://pdbwiki.org)

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