5V6Y Transport Protein Membrane Protein date Mar 17, 2017
title Crystal Structure Of The Human Clr:Ramp1 Extracellular Domai Heterodimer With Bound High-Affinity And Altered Selectivit Adrenomedullin Variant
authors A.Pioszak, J.Booe
compound source
Molecule: Maltose-Binding Periplasmic Protein,Receptor Acti Modifying Protein 1,Calcitonin Gene-Related Peptide Type 1
Chain: A, B, C, D
Synonym: Mmbp,Maltodextrin-Binding Protein,Maltose-Binding Mbp,Calcitonin-Receptor-Like Receptor Activity-Modifying Pr Crlr Activity-Modifying Protein 1,Cgrp Type 1 Receptor,Calc Receptor-Like Receptor;
Engineered: Yes
Organism_scientific: Escherichia Coli O157:H7, Homo Sapiens
Organism_common: Human
Organism_taxid: 83334, 9606
Gene: Male, Z5632, Ecs5017, Ramp1, Calcrl, Cgrpr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami B (De3)

Molecule: Adm
Chain: E, F, G, H
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.212 R_Free 0.245
length a length b length c angle alpha angle beta angle gamma
195.496 69.436 200.000 90.00 99.43 90.00
method X-Ray Diffractionresolution 2.80 Å
A, D, C, B

Primary referenceProbing the mechanism of receptor activity-modifying protein modulation of GPCR ligand selectivity through rational design of potent adrenomedullin and calcitonin gene-related peptide antagonists., Booe JM, Warner ML, Roehrkasse AM, Hay DL, Pioszak AA, Mol Pharmacol. 2018 Jan 23. pii: mol.117.110916. doi: 10.1124/mol.117.110916. PMID:29363552
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (776 Kb) [Save to disk]
  • Biological Unit Coordinates (5v6y.pdb1.gz) 195 Kb
  • Biological Unit Coordinates (5v6y.pdb2.gz) 198 Kb
  • Biological Unit Coordinates (5v6y.pdb3.gz) 195 Kb
  • Biological Unit Coordinates (5v6y.pdb4.gz) 194 Kb
  • CSU: Contacts of Structural Units for 5V6Y
  • Structure Factors (425 Kb)
  • Retrieve 5V6Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V6Y from S2C, [Save to disk]
  • View 5V6Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V6Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5v6y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v6y_H] [5v6y_C] [5v6y_F] [5v6y_G] [5v6y_E] [5v6y_B] [5v6y_D] [5v6y_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V6Y
  • Community annotation for 5V6Y at PDBWiki (http://pdbwiki.org)

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