5V7C	Rna Binding Protein	date	Mar 20, 2017
title	Crystal Structure Of Larp1-Unique Domain Dm15 Bound 5'Top Rn
authors	A.J.Berman, R.M.Lahr, H.A.Al-Ashtal
compound		source
Molecule: La-Related Protein 1 Chain: B Synonym: La Ribonucleoprotein Domain Family Member 1 Engineered: Yes Other_details: Dm15		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Larp1, Kiaa0731, Larp Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Rna (5'-R(Cpupupupupcpcpg)-3') Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: I 4	R_factor 0.207 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.095 107.095 29.113 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.59 Å
Primary reference	La-related protein 1 (LARP1) binds the mRNA cap, blocking eIF4F assembly on TOP mRNAs., Lahr RM, Fonseca BD, Ciotti GE, Al-Ashtal HA, Jia JJ, Niklaus MR, Blagden SP, Alain T, Berman AJ, Elife. 2017 Apr 5;6. pii: e24146. doi: 10.7554/eLife.24146. PMID:28379136

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (5v7c.pdb1.gz) 27 Kb CSU: Contacts of Structural Units for 5V7C Structure Factors (47 Kb) Retrieve 5V7C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5V7C from S2C, [Save to disk] Re-refined 5v7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5V7C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5V7C

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5v7c] [5v7c_B] [5v7c_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5V7C

Community annotation for 5V7C at PDBWiki (http://pdbwiki.org)

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