5V7T Transferase Transferase Inhibitor date Mar 20, 2017
title Crystal Structure Of Parp14 Bound To N-{4-[4-(Diphenylmethox Piperidin-1-Yl]Butyl}[1,2,4]Triazolo[4,3-B]Pyridazin-6-Amin Inhibitor
authors K.S.Saikatendu, M.Hirozane
compound source
Molecule: Poly [Adp-Ribose] Polymerase 14
Chain: A
Synonym: Parp-14,Adp-Ribosyltransferase Diphtheria Toxin-Li Artd8,B Aggressive Lymphoma Protein 2;
Ec: 2.4.2.30
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parp14, Bal2, Kiaa1268
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 62 2 2
R_factor 0.221 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.301 83.301 129.940 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand 91V enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of PARP14 inhibitors using novel methods for detecting auto-ribosylation., Yoneyama-Hirozane M, Matsumoto SI, Toyoda Y, Saikatendu KS, Zama Y, Yonemori K, Oonishi M, Ishii T, Kawamoto T, Biochem Biophys Res Commun. 2017 May 6;486(3):626-631. doi:, 10.1016/j.bbrc.2017.03.052. Epub 2017 Mar 14. PMID:28315326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (5v7t.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 5V7T
  • CSU: Contacts of Structural Units for 5V7T
  • Structure Factors (341 Kb)
  • Retrieve 5V7T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V7T from S2C, [Save to disk]
  • Re-refined 5v7t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5V7T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5V7T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v7t] [5v7t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5V7T
  • Community annotation for 5V7T at PDBWiki (http://pdbwiki.org)

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