5V7Z Signaling Protein date Mar 21, 2017
title Ssnmr Structure Of The Human Rip1rip3 Necrosome
authors M.Mompean, W.Li, J.Li, S.Laage, A.B.Siemer, H.Wu, A.E.Mcdermott
compound source
Molecule: Pro-Leu-Val-Asn-Ile-Tyr-Asn-Cys-Ser-Gly-Val-Gln-V Asp;
Chain: A, C, E, G
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Thr-Ile-Tyr-Asn-Ser-Thr-Gly-Ile-Gln-Ile-Gly-Ala-T Tyr-Met-Glu-Ile;
Chain: B, D, F, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolid-State NMR
Primary referenceThe Structure of the Necrosome RIPK1-RIPK3 Core, a Human Hetero-Amyloid Signaling Complex., Mompean M, Li W, Li J, Laage S, Siemer AB, Bozkurt G, Wu H, McDermott AE, Cell. 2018 May 17;173(5):1244-1253.e10. doi: 10.1016/j.cell.2018.03.032. Epub, 2018 Apr 19. PMID:29681455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk]
  • Biological Unit Coordinates (5v7z.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 5V7Z
  • Original NMR restraints for 5V7Z from PDB
  • Retrieve 5V7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V7Z from S2C, [Save to disk]
  • View 5V7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V7Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5v7z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v7z_G] [5v7z_H] [5v7z_D] [5v7z_C] [5v7z_B] [5v7z_A] [5v7z_E] [5v7z_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V7Z
  • Community annotation for 5V7Z at PDBWiki (http://pdbwiki.org)

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