5V83	Ligase	date	Mar 21, 2017
title	Structure Of Dcn1 Bound To Nacm-Hit
authors	R.K.Guy, B.A.Schulman, D.C.Scott, J.T.Hammill
compound		source
Molecule: Lysozyme,Dcn1-Like Protein 1 Chimera Chain: A Synonym: Dcun1 Domain-Containing Protein 1,Defective In Cul Neddylation Protein 1-Like Protein 1,Squamous Cell Carcinom Oncogene; Ec: 3.2.1.17 Engineered: Yes		Organism_scientific: Enterobacteria Phage T4, Homo Sapiens Organism_common: Human Organism_taxid: 10665, 9606 Gene: E, T4tp126, Dcun1d1, Dcun1l1, Rp42, Sccro Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsf Duet
symmetry	Space Group: P 1 21 1	R_factor 0.171 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.966 97.280 58.148 90.00 104.39 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	8Z7	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Blocking an N-terminal acetylation-dependent protein interaction inhibits an E3 ligase., Scott DC, Hammill JT, Min J, Rhee DY, Connelly M, Sviderskiy VO, Bhasin D, Chen Y, Ong SS, Chai SC, Goktug AN, Huang G, Monda JK, Low J, Kim HS, Paulo JA, Cannon JR, Shelat AA, Chen T, Kelsall IR, Alpi AF, Pagala V, Wang X, Peng J, Singh B, Harper JW, Schulman BA, Guy RK, Nat Chem Biol. 2017 Jun 5. doi: 10.1038/nchembio.2386. PMID:28581483

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk] Biological Unit Coordinates (5v83.pdb1.gz) 125 Kb LPC: Ligand-Protein Contacts for 5V83 CSU: Contacts of Structural Units for 5V83 Structure Factors (510 Kb) Retrieve 5V83 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5V83 from S2C, [Save to disk] Re-refined 5v83 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5v83_A] [5v83] SWISS-PROT database: Domain organization of by SWISSPFAM

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