5V8O Transferase Transferase Inhibitor date Mar 22, 2017
title Discovery Of A High Affinity Inhibitor Of Cgas
authors J.Hall
compound source
Molecule: Cyclic Gmp-Amp Synthase
Chain: A, B
Synonym: H-Cgas,2'3'-Cgamp Synthase,Mab-21 Domain-Containin 1;
Ec: 2.7.7.86
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mb21d1, C6orf150
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.224 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
216.729 48.060 89.488 90.00 110.65 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand 8ZM, ZN enzyme Transferase E.C.2.7.7.86 BRENDA
Primary referenceDiscovery of PF-06928215 as a high affinity inhibitor of cGAS enabled by a novel fluorescence polarization assay., Hall J, Brault A, Vincent F, Weng S, Wang H, Dumlao D, Aulabaugh A, Aivazian D, Castro D, Chen M, Culp J, Dower K, Gardner J, Hawrylik S, Golenbock D, Hepworth D, Horn M, Jones L, Jones P, Latz E, Li J, Lin LL, Lin W, Lin D, Lovering F, Niljanskul N, Nistler R, Pierce B, Plotnikova O, Schmitt D, Shanker S, Smith J, Snyder W, Subashi T, Trujillo J, Tyminski E, Wang G, Wong J, Lefker B, Dakin L, Leach K, PLoS One. 2017 Sep 21;12(9):e0184843. doi: 10.1371/journal.pone.0184843., eCollection 2017. PMID:28934246
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (442 Kb) [Save to disk]
  • Biological Unit Coordinates (5v8o.pdb1.gz) 435 Kb
  • LPC: Ligand-Protein Contacts for 5V8O
  • CSU: Contacts of Structural Units for 5V8O
  • Structure Factors (609 Kb)
  • Retrieve 5V8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V8O from S2C, [Save to disk]
    • View 5V8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5V8O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v8o_B] [5v8o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5V8O
  • Community annotation for 5V8O at PDBWiki (http://pdbwiki.org)

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