5VA0 Transcription Dna date Mar 24, 2017
title Glucocorticoid Receptor Dna Binding Domain In Complex With A Response Element From Vcam-1 Promoter
authors E.R.Weikum, E.A.Ortlund
compound source
Molecule: Glucocorticoid Receptor
Chain: A, B
Fragment: Unp Residues 84-155
Synonym: Gr,Nuclear Receptor Subfamily 3 Group C Member 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr3c1, Grl
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpgpgpcptpgpapcptpcpaptpcp 3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Cptptpgpaptpgpapgptpcpapgp 3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.442 96.280 105.223 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTethering not required: the glucocorticoid receptor binds directly to activator protein-1 recognition motifs to repress inflammatory genes., Weikum ER, de Vera IMS, Nwachukwu JC, Hudson WH, Nettles KW, Kojetin DJ, Ortlund EA, Nucleic Acids Res. 2017 Jun 7. doi: 10.1093/nar/gkx509. PMID:28591827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (5va0.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5VA0
  • CSU: Contacts of Structural Units for 5VA0
  • Structure Factors (110 Kb)
  • Retrieve 5VA0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VA0 from S2C, [Save to disk]
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5va0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5va0_A] [5va0_C] [5va0_B] [5va0_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VA0
  • Community annotation for 5VA0 at PDBWiki (http://pdbwiki.org)

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