5VA3 Transport Protein date Mar 24, 2017
title Cryo-Em Structure Of The Human Ether-A-Go-Go Related K+ Chan
authors W.W.Wang, R.Mackinnon
compound source
Molecule: Potassium Voltage-Gated Channel Subfamily H Membe
Chain: A
Fragment: Unp Residues 1-140,381-870,1006-1159
Synonym: Eag Homolog, Ether-A-Go-Go-Related Gene Potassium Herg1, Voltage-Gated Potassium Channel Subunit Kv11.1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kcnh2, Erg, Erg1, Herg
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Gnti-
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bacmam
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCryo-EM Structure of the Open Human Ether-a-go-go-Related K+ Channel hERG., Wang W, MacKinnon R, Cell. 2017 Apr 20;169(3):422-430.e10. doi: 10.1016/j.cell.2017.03.048. PMID:28431243
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (5va3.pdb1.gz) 352 Kb
  • CSU: Contacts of Structural Units for 5VA3
  • Retrieve 5VA3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VA3 from S2C, [Save to disk]
  • View 5VA3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VA3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5va3] [5va3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VA3
  • Community annotation for 5VA3 at PDBWiki (http://pdbwiki.org)

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