5VBR Transcription Inhibitor date Mar 30, 2017
title Crystal Structure Of The First Bromodomain Of Human Brdt In With Volasertib
authors S.W.Ember, J.Y.Zhu, E.Schonbrunn
compound source
Molecule: Bromodomain Testis-Specific Protein
Chain: A, B
Fragment: Unp Residues 29-137
Synonym: Cancertestis Antigen 9,Ct9,Ring3-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brdt
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.155 R_Free 0.201
length a length b length c angle alpha angle beta angle gamma
65.450 31.050 69.800 90.00 97.09 90.00
method X-Ray Diffractionresolution 1.90 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5vbr.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (5vbr.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (5vbr.pdb3.gz) 86 Kb
  • CSU: Contacts of Structural Units for 5VBR
  • Structure Factors (181 Kb)
  • Retrieve 5VBR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VBR from S2C, [Save to disk]
  • View 5VBR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VBR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5vbr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vbr_B] [5vbr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VBR
  • Community annotation for 5VBR at PDBWiki (http://pdbwiki.org)

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