5VCS	Transferase	date	Mar 31, 2017
title	Alpha-1,6-Mannosyl-Glycoprotein 2-Beta-N-Acetylglucosaminylt With Bound Acceptor
authors	J.H.Sanders, R.Kadirvelraj, Z.A.Wood
compound		source
Molecule: Alpha-1,6-Mannosyl-Glycoprotein 2-Beta-N- Acetylglucosaminyltransferase; Chain: A, B Fragment: Unp Residues 29-447 Synonym: Beta-1,2-N-Acetylglucosaminyltransferase II, Glcna Gnt-II, Mannoside Acetylglucosaminyltransferase 2, N-Glycos Oligosaccharide-Glycoprotein N-Acetylglucosaminyltransferas Ec: 2.4.1.143 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mgat2 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
symmetry	Space Group: P 2 21 21	R_factor 0.247 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.280 129.160 175.800 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	BMA, DMS, MAN, NAG, PEG	enzyme	Transferase E.C.2.4.1.143 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Human N-acetylglucosaminyltransferase II substrate recognition uses a modular architecture that includes a convergent exosite., Kadirvelraj R, Yang JY, Sanders JH, Liu L, Ramiah A, Prabhakar PK, Boons GJ, Wood ZA, Moremen KW, Proc Natl Acad Sci U S A. 2018 Apr 16. pii: 1716988115. doi:, 10.1073/pnas.1716988115. PMID:29666272

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk] Biological Unit Coordinates (5vcs.pdb1.gz) 236 Kb LPC: Ligand-Protein Contacts for 5VCS CSU: Contacts of Structural Units for 5VCS Structure Factors (309 Kb) Retrieve 5VCS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VCS from S2C, [Save to disk]

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vcs_A] [5vcs_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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