5VCY Transferase Transferase Inhibitor date Apr 01, 2017
title Crystal Structure Of Human Myt1 Kinase Domain In Complex Wit Bosutinib
authors J.Y.Zhu, E.Schonbrunn
compound source
Molecule: Membrane-Associated Tyrosine- And Threonine-Speci Inhibitory Kinase;
Chain: A
Fragment: Kinase Domain, Unp Residues 75-362
Synonym: Myt1 Kinase
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkmyt1, Myt1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.140 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.630 55.000 113.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand DB8, DMS, EDO, PEG enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of Wee kinases functionality and inactivation by diverse small molecule inhibitors., Zhu JY, Cuellar RAD, Berndt N, Lee HE, Olesen SH, Martin MP, Jensen JT, Georg GI, Schonbrunn E, J Med Chem. 2017 Aug 9. doi: 10.1021/acs.jmedchem.7b00996. PMID:28792760
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (5vcy.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 5VCY
  • CSU: Contacts of Structural Units for 5VCY
  • Structure Factors (332 Kb)
  • Retrieve 5VCY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VCY from S2C, [Save to disk]
  • View 5VCY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VCY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vcy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VCY
  • Community annotation for 5VCY at PDBWiki (http://pdbwiki.org)

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