5VD7 Transferase Transferase Inhibitor date Apr 01, 2017
title Crystal Structure Of Human Wee1 Kinase Domain In Complex Wit 098, A Mk1775 Analogue
authors J.Y.Zhu, E.Schonbrunn
compound source
Molecule: Wee1-Like Protein Kinase
Chain: A
Fragment: Unp Residues 291-575
Synonym: Wee1hu,Wee1a Kinase
Ec: 2.7.10.2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wee1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.190 44.550 64.640 90.00 102.05 90.00
method X-Ray Diffractionresolution 2.08 Å
ligand 99V, CL, EDO enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (5vd7.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 5VD7
  • CSU: Contacts of Structural Units for 5VD7
  • Structure Factors (133 Kb)
  • Retrieve 5VD7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VD7 from S2C, [Save to disk]
    • View 5VD7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VD7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vd7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VD7
  • Community annotation for 5VD7 at PDBWiki (http://pdbwiki.org)

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