5VDK	Transferase Transferase Inhibitor	date	Apr 03, 2017
title	Crystal Structure Of Human Wee2 Kinase Domain In Complex Wit
authors	J.Y.Zhu, E.Schonbrunn
compound		source
Molecule: Wee1-Like Protein Kinase 2 Chain: A Fragment: Unp Residues 202-492 Synonym: Wee1-Like Protein Kinase 1b,Wee1b Kinase Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wee2, Wee1b Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Ripl Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 32	R_factor 0.225 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.810 68.810 58.040 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	8X7, PO4	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis of Wee kinases functionality and inactivation by diverse small molecule inhibitors., Zhu JY, Cuellar RAD, Berndt N, Lee HE, Olesen SH, Martin MP, Jensen JT, Georg GI, Schonbrunn E, J Med Chem. 2017 Aug 9. doi: 10.1021/acs.jmedchem.7b00996. PMID:28792760

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk] Biological Unit Coordinates (5vdk.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 5VDK CSU: Contacts of Structural Units for 5VDK Structure Factors (69 Kb) Retrieve 5VDK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VDK from S2C, [Save to disk]

View 5VDK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VDK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vdk_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5VDK at PDBWiki (http://pdbwiki.org)

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