5VEY Transferase, Structural Protein, Signali date Apr 06, 2017
title Solution Nmr Structure Of Histone H2a-H2b Mono-Ubiquitylated Lys15 In Complex With Rnf169 (653-708)
authors Q.Hu, M.V.Botuyan, G.Cui, G.Mer
compound source
Molecule: Histone H2b Type 1-J,Histone H2a Type 1-Be
Chain: A
Synonym: Histone H2b.1,Histone H2b.R,H2br,Histone H2a.2,Hi H2aa,Histone H2am;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h2bj, H2bfr, Hist1h2ab, H2afm, Hist1h2ae, H2afa
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7.7

Molecule: Polyubiquitin-B
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: E3 Ubiquitin-Protein Ligase Rnf169
Chain: C
Synonym: Ring Finger Protein 169,Ring-Type E3 Ubiquitin Tra Rnf169;
Ec: 2.3.2.27
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rnf169, Kiaa1991
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptev
methodSolution NMR
ligand
enzyme Transferase E.C.2.3.2.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1736 Kb) [Save to disk]
  • Biological Unit Coordinates (5vey.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (5vey.pdb2.gz) 88 Kb
  • CSU: Contacts of Structural Units for 5VEY
  • Original NMR restraints for 5VEY from PDB
  • Retrieve 5VEY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VEY from S2C, [Save to disk]
  • View 5VEY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VEY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5vey from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vey] [5vey_B] [5vey_A] [5vey_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VEY
  • Community annotation for 5VEY at PDBWiki (http://pdbwiki.org)

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