OCA Atlas for 5VEY

5VEY

Transferase, Structural Protein, Signali

date

Apr 06, 2017

title

Solution Nmr Structure Of Histone H2a-H2b Mono-Ubiquitylated Lys15 In Complex With Rnf169 (653-708)

authors

Q.Hu, M.V.Botuyan, G.Cui, G.Mer

compound

source

Molecule: Histone H2b Type 1-J,Histone H2a Type 1-Be
Chain: A
Synonym: Histone H2b.1,Histone H2b.R,H2br,Histone H2a.2,Hi H2aa,Histone H2am;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h2bj, H2bfr, Hist1h2ab, H2afm, Hist1h2ae, H2afa
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7.7

Molecule: Polyubiquitin-B
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: E3 Ubiquitin-Protein Ligase Rnf169
Chain: C
Synonym: Ring Finger Protein 169,Ring-Type E3 Ubiquitin Tra Rnf169;
Ec: 2.3.2.27
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rnf169, Kiaa1991
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptev

method

Solution NMR

ligand

enzyme

Transferase E.C.2.3.2.27 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1736 Kb) [Save to disk]

Biological Unit Coordinates (5vey.pdb1.gz) 86 Kb

CSU: Contacts of Structural Units for 5VEY

Original NMR restraints for 5VEY from PDB

Retrieve 5VEY in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5VEY from S2C, [Save to disk]

View 5VEY in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VEY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vey] [5vey_B] [5vey_A] [5vey_C]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5VEY

Community annotation for 5VEY at PDBWiki (http://pdbwiki.org)

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]