5VF0	Transferase	date	Apr 06, 2017
title	Solution Nmr Structure Of Human Rad18 (198-240) In Complex W Ubiquitin
authors	Q.Hu, M.V.Botuyan, G.Mer
compound		source
Molecule: Polyubiquitin-B Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
Molecule: E3 Ubiquitin-Protein Ligase Rad18 Chain: B Synonym: Postreplication Repair Protein Rad18,Hrad18,Ring F Protein 73,Ring-Type E3 Ubiquitin Transferase Rad18; Ec: 2.3.2.27 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rad18, Rnf73 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptev
method	Solution NMR
ligand	ZN	enzyme	Transferase E.C.2.3.2.27 BRENDA
Gene Ontology	Chain Function Process Component B
Primary reference	Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18., Hu Q, Botuyan MV, Cui G, Zhao D, Mer G, Mol Cell. 2017 May 18;66(4):473-487.e9. doi: 10.1016/j.molcel.2017.04.009. Epub, 2017 May 11. PMID:28506460

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (625 Kb) [Save to disk] Biological Unit Coordinates (5vf0.pdb1.gz) 32 Kb LPC: Ligand-Protein Contacts for 5VF0 CSU: Contacts of Structural Units for 5VF0 Original NMR restraints for 5VF0 from PDB Retrieve 5VF0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VF0 from S2C, [Save to disk]

View 5VF0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VF0

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vf0_A] [5vf0] [5vf0_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5VF0

Community annotation for 5VF0 at PDBWiki (http://pdbwiki.org)

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