5VFR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AGS, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • proteasome-activating ATPase...


  • B


    C


    D
  • proteasome-activating ATPase...


  • E

  • proteasome complex
  • F


    G, g
  • positive regulation of NF-ka...

  • I, i


    J, j


    L, l


    N, o, n, O


    Q, q


    T, t


    U
  • enzyme regulator activity


  • V
  • enzyme regulator activity


  • W


    X


    Y
  • enzyme regulator activity


  • Z


    a


    c
  • endopeptidase activator acti...


  • d


    e


    f
  • enzyme regulator activity


  • h, H


    k, K


    m, M


    p, P


    r, R


    s, S


    Primary referenceStructural mechanism for nucleotide-driven remodeling of the AAA-ATPase unfoldase in the activated human 26S proteasome., Zhu Y, Wang WL, Yu D, Ouyang Q, Lu Y, Mao Y, Nat Commun. 2018 Apr 10;9(1):1360. doi: 10.1038/s41467-018-03785-w. PMID:29636472
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1753 Kb) [Save to disk]
  • Biological Unit Coordinates (5vfr.pdb1.gz) 1738 Kb
  • LPC: Ligand-Protein Contacts for 5VFR
  • CSU: Contacts of Structural Units for 5VFR
  • Retrieve 5VFR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VFR from S2C, [Save to disk]
  • View 5VFR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vfr_A] [5vfr_B] [5vfr_C] [5vfr_D] [5vfr_E] [5vfr_F] [5vfr_G] [5vfr_H] [5vfr_I] [5vfr_J] [5vfr_K] [5vfr_L] [5vfr_M] [5vfr_N] [5vfr_O] [5vfr_P] [5vfr_Q] [5vfr_R] [5vfr_S] [5vfr_T] [5vfr_U] [5vfr_V] [5vfr_W] [5vfr_X] [5vfr_Y] [5vfr_Z] [5vfr_a] [5vfr_b] [5vfr_c] [5vfr_d] [5vfr_e] [5vfr_f] [5vfr_g] [5vfr_h] [5vfr_i] [5vfr_j] [5vfr_k] [5vfr_l] [5vfr_m] [5vfr_n] [5vfr_o] [5vfr_p] [5vfr_q] [5vfr_r] [5vfr_s] [5vfr_t]
  • SWISS-PROT database:

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