5VFW Protein Binding date Apr 09, 2017
title An Engineered Cyclic Peptide Alleviates Symptoms Of Inflamma Murine Model Of Inflammatory Bowel Disease
authors N.L.Daly, C.Cobos Caceres
compound source
Molecule: Annexin A1
Chain: A
Fragment: N Terminal Annexin I (2-26)
Synonym: Annexin I,Annexin-1,Calpactin II,Calpactin-2,Chrom Lipocortin I,Phospholipase A2 Inhibitory Protein,P35;
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAn engineered cyclic peptide alleviates symptoms of inflammation in a murine model of inflammatory bowel disease., Cobos Caceres C, Bansal PS, Navarro S, Wilson D, Don L, Giacomin P, Loukas A, Daly NL, J Biol Chem. 2017 May 4. pii: jbc.M117.779215. doi: 10.1074/jbc.M117.779215. PMID:28473469
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (5vfw.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 5VFW
  • Original NMR restraints for 5VFW from PDB
  • Retrieve 5VFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VFW from S2C, [Save to disk]
    • View 5VFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VFW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vfw_A] [5vfw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VFW
  • Community annotation for 5VFW at PDBWiki (http://pdbwiki.org)

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