5VGR	Hydrolase	date	Apr 11, 2017
title	Human Atlastin-3, Gdp-Bound
authors	J.P.O'Donnell, H.Sondermann
compound		source
Molecule: Atlastin-3 Chain: A, B Fragment: Residues 21-442 Ec: 3.6.5.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Atl3 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333 Expression_system_strain: Bl21
symmetry	Space Group: C 1 2 1	R_factor 0.198 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.666 57.057 143.423 90.00 116.22 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	GDP	enzyme	Hydrolase E.C.3.6.5 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Timing and Reset Mechanism of GTP Hydrolysis-Driven Conformational Changes of Atlastin., O'Donnell JP, Cooley RB, Kelly CM, Miller K, Andersen OS, Rusinova R, Sondermann H, Structure. 2017 Jul 5;25(7):997-1010.e4. doi: 10.1016/j.str.2017.05.007. Epub, 2017 Jun 9. PMID:28602821

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk] Biological Unit Coordinates (5vgr.pdb1.gz) 137 Kb Biological Unit Coordinates (5vgr.pdb2.gz) 118 Kb LPC: Ligand-Protein Contacts for 5VGR CSU: Contacts of Structural Units for 5VGR Structure Factors (490 Kb) Retrieve 5VGR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VGR from S2C, [Save to disk] Re-refined 5vgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5VGR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VGR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vgr] [5vgr_A] [5vgr_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5VGR

Community annotation for 5VGR at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---