5VIB	Transferase	date	Apr 14, 2017
title	Crystal Structure Of Protein Kinase A In Complex With The Pk And Aminobenzothiazole Based Inhibitors
authors	R.A.Judge
compound		source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A Chain: A Synonym: Pka C-Alpha Ec: 2.7.11.11 Engineered: Yes		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Gene: Prkaca Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2(De3)T1r
Molecule: Pki Peptide Chain: B Fragment: Unp Residues 6-23 Synonym: Pki-Alpha Engineered: Yes		Synthetic: Yes Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913
symmetry	Space Group: P 21 21 21	R_factor 0.212 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.857 72.960 77.348 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.37 Å
ligand	9D1, TPO	enzyme	Transferase E.C.2.7.11.11 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Design of Aminobenzothiazole Inhibitors of Rho Kinases 1 and 2 by Using Protein Kinase A as a Structure Surrogate., Judge RA, Scott VE, Simler GH, Pratt SD, Namovic MT, Putman CB, Aguirre A, Stoll VS, Mamo M, Swann SI, Hobson AD, Chembiochem. 2018 Jan 4. doi: 10.1002/cbic.201700547. PMID:29314498

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (5vib.pdb1.gz) 59 Kb LPC: Ligand-Protein Contacts for 5VIB CSU: Contacts of Structural Units for 5VIB Structure Factors (544 Kb) Retrieve 5VIB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VIB from S2C, [Save to disk]

View 5VIB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VIB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vib_A] [5vib_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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