5VMP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 9FJ, NI, ZN enzyme
Primary referenceDesign of KDM4 Inhibitors with Antiproliferative Effects in Cancer Models., Chen YK, Bonaldi T, Cuomo A, Del Rosario JR, Hosfield DJ, Kanouni T, Kao SC, Lai C, Lobo NA, Matuszkiewicz J, McGeehan A, O'Connell SM, Shi L, Stafford JA, Stansfield RK, Veal JM, Weiss MS, Yuen NY, Wallace MB, ACS Med Chem Lett. 2017 Jul 27;8(8):869-874. doi: 10.1021/acsmedchemlett.7b00220., eCollection 2017 Aug 10. PMID:28835804
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]
  • Biological Unit Coordinates (5vmp.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (5vmp.pdb2.gz) 62 Kb
  • Biological Unit Coordinates (5vmp.pdb3.gz) 60 Kb
  • Biological Unit Coordinates (5vmp.pdb4.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 5VMP
  • CSU: Contacts of Structural Units for 5VMP
  • Structure Factors (1682 Kb)
  • Retrieve 5VMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VMP from S2C, [Save to disk]
    • View 5VMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vmp_A] [5vmp_B] [5vmp_C] [5vmp_D]
  • SWISS-PROT database:

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