5VMX | Transcription Dna | date | Apr 28, 2017 |
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
title | Kaiso (Zbtb33) Zinc Finger Dna Binding Domain In Complex Wit Cpg-Methylated Dna Resembling The Specific Kaiso Binding Se (Kbs) | ||||||||||||||
authors | E.N.Nikolova, R.L.Stanfield, M.A.Martinez-Yamout, H.J.Dyson, P.E | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Transcriptional Regulator Kaiso Chain: A Fragment: Residues 471-604 Synonym: Zinc Finger And Btb Domain-Containing Protein 33 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Zbtb33, Kaiso, Znf348 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) [Dnay] Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21d | ||||||||||||||
Molecule: Dna (5'-D(Tpgpcptptpcpcp(5cm)Pgp(5cm) Pgpapaptpapapcpg)-3'); Chain: D Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||
Molecule: Dna (5'- D(Cpgptptpaptptpcpgpcpgpgpgpapapgpcpa)-3' Chain: E Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||
symmetry | Space Group: C 2 2 2 |
| |||||||||||||
crystal cell |
| ||||||||||||||
method | X-Ray Diffraction | resolution | 2.05 Å | ||||||||||||
ligand | 5CM, CL, ZN | enzyme |
| ||||||||||||
Primary reference | CH...O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso., Nikolova EN, Stanfield RL, Dyson HJ, Wright PE, Biochemistry. 2018 Mar 26. doi: 10.1021/acs.biochem.8b00065. PMID:29546986 |
Data retrieval |
View 5VMX in 3D |
Visual 3D analysis of 5VMX |
Structure-derived information |
Sequence-derived information |
Other resources with information on 5VMX |
OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |