5VNF	Protein Transport	date	Apr 30, 2017
title	Crystal Structure Of Sec23asec24asec22 Complexed With A C- Vv Sorting Motif
authors	W.Ma, J.Goldberg
compound		source
Molecule: Protein Transport Protein Sec23a Chain: A Synonym: Sec23-Related Protein A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sec23a Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_cell_line: Hi-5
Molecule: Protein Transport Protein Sec24a Chain: B Fragment: Unp Residues 346-1093 Synonym: Sec24-Related Protein A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sec24a Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_cell_line: Hi-5
Molecule: Vesicle-Trafficking Protein Sec22b Chain: C Fragment: Unp Residues 1-157 Synonym: Er-Golgi Snare Of 24 Kda,Ers24,Sec22 Vesicle-Traff Protein Homolog B,Sec22 Vesicle-Trafficking Protein-Like 1, Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Sec22b, Sec22l1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: C-Terminal Vv Sorting Motif: Val-Thr-Ser-Val-Val Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 Other_details: C-Terminal Vv Sorting Motif
symmetry	Space Group: C 1 2 1	R_factor 0.205 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 147.824 97.077 129.820 90.00 90.12 90.00
method	X-Ray Diffraction	resolution	2.41 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A GTPase activator activity B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (532 Kb) [Save to disk] Biological Unit Coordinates (5vnf.pdb1.gz) 523 Kb LPC: Ligand-Protein Contacts for 5VNF CSU: Contacts of Structural Units for 5VNF Structure Factors (1598 Kb) Retrieve 5VNF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VNF from S2C, [Save to disk] Re-refined 5vnf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5VNF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VNF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vnf_A] [5vnf_B] [5vnf_C] [5vnf_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5VNF

Community annotation for 5VNF at PDBWiki (http://pdbwiki.org)

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