5VO2	Transferase Transferase Inhibitor	date	May 01, 2017
title	Dlk In Complex With Inhibitor 5-(1-Isopropyl-5-(1-(Oxetan-3- Piperidin-4-Yl)-1h-Pyrazol-3-Yl)-3-(Trifluoromethyl)Pyridin (Compound 7)
authors	S.F.Harris, J.Yin
compound		source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 12 Chain: A Fragment: Unp Residues 115-402 Synonym: Dual Leucine Zipper Bearing Kinase,Dlk,Leucine-Zip Protein Kinase,Zpk,Mapk-Upstream Kinase,Muk,Mixed Lineage K Ec: 2.7.11.25 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Map3k12, Zpk Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.170 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.290 39.463 60.113 90.00 104.81 90.00
method	X-Ray Diffraction	resolution	2.96 Å
ligand	9FV	enzyme	Transferase E.C.2.7.11.25 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Selective Inhibitors of Dual Leucine Zipper Kinase (DLK, MAP3K12) with Activity in a Model of Alzheimer's Disease., Patel S, Meilandt WJ, Erickson RI, Chen J, Deshmukh G, Estrada AA, Fuji RN, Gibbons P, Gustafson A, Harris SF, Imperio J, Liu W, Liu X, Liu Y, Lyssikatos JP, Ma C, Yin J, Lewcock JW, Siu M, J Med Chem. 2017 Sep 20. doi: 10.1021/acs.jmedchem.7b00843. PMID:28929759

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (5vo2.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 5VO2 CSU: Contacts of Structural Units for 5VO2 Structure Factors (142 Kb) Retrieve 5VO2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VO2 from S2C, [Save to disk]

View 5VO2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VO2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vo2_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5VO2

Community annotation for 5VO2 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---