5VPC	Transcription	date	May 04, 2017
title	Transcription Factor Fosbjund Bzip Domain In Its Oxidized F II Crystal
authors	Z.Yin, M.C.Machius, G.Rudenko
compound		source
Molecule: Protein Fosb Chain: A, C Fragment: Unp Residues 153-219 Synonym: G0g1 Switch Regulatory Protein 3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fosb, G0s3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21-Nesg
Molecule: Transcription Factor Jun-D Chain: B, D Fragment: Unp Residues 266-332 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jund Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
symmetry	Space Group: C 1 2 1	R_factor 0.251 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.177 49.949 97.746 90.00 122.94 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CL, NA	enzyme
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Activator Protein-1: redox switch controlling structure and DNA-binding., Yin Z, Machius M, Nestler EJ, Rudenko G, Nucleic Acids Res. 2017 Sep 7. doi: 10.1093/nar/gkx795. PMID:28981703

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk] Biological Unit Coordinates (5vpc.pdb1.gz) 62 Kb Biological Unit Coordinates (5vpc.pdb2.gz) 57 Kb LPC: Ligand-Protein Contacts for 5VPC CSU: Contacts of Structural Units for 5VPC Structure Factors (392 Kb) Retrieve 5VPC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VPC from S2C, [Save to disk]

View 5VPC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VPC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vpc_A] [5vpc_C] [5vpc_D] [5vpc_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5VPC

Community annotation for 5VPC at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---