5VPE	Transcription Dna	date	May 04, 2017
title	Transcription Factor Fosbjund Bzip Domain In Complex With C Dna, Type-I Crystal
authors	Z.Yin, M.Machius, G.Rudenko
compound		source
Molecule: Protein Fosb Chain: C, A Fragment: Unp Residues 153-219 Synonym: G0g1 Switch Regulatory Protein 3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fosb, G0s3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21-Nesg
Molecule: Transcription Factor Jun-D Chain: D, B Fragment: Unp Residues 266-332 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jund Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
Molecule: Dna (5'- D(Cpgptpcpgpgptpgpapcptpcpapcpcpgpapcpg) Chain: G, E Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: Dna (5'- D(Cpgptpcpgpgptpgpapgptpcpapcpcpgpapcpg) Chain: H, F Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.218 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.479 90.755 105.618 90.00 117.93 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	CL, EDO, NA, PO4	enzyme
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Activator Protein-1: redox switch controlling structure and DNA-binding., Yin Z, Machius M, Nestler EJ, Rudenko G, Nucleic Acids Res. 2017 Sep 7. doi: 10.1093/nar/gkx795. PMID:28981703

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk] Biological Unit Coordinates (5vpe.pdb1.gz) 110 Kb Biological Unit Coordinates (5vpe.pdb2.gz) 114 Kb LPC: Ligand-Protein Contacts for 5VPE CSU: Contacts of Structural Units for 5VPE Structure Factors (1560 Kb) Retrieve 5VPE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VPE from S2C, [Save to disk]

View 5VPE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VPE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vpe_F] [5vpe_A] [5vpe_G] [5vpe_B] [5vpe_D] [5vpe_E] [5vpe_C] [5vpe_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5VPE at PDBWiki (http://pdbwiki.org)

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