5VPS		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	9G1, EDO	enzyme
Gene	BAMMC406
Gene Ontology	Chain Function Process Component A
Primary reference	Cautionary Tale of Using Tris(alkyl)phosphine Reducing Agents with NAD(+)-Dependent Enzymes., Patel SM, Smith TG, Morton M, Stiers KM, Seravalli J, Mayclin SJ, Edwards TE, Tanner JJ, Becker DF, Biochemistry. 2020 Aug 28. doi: 10.1021/acs.biochem.0c00490. PMID:32841567

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (5vps.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 5VPS CSU: Contacts of Structural Units for 5VPS Structure Factors (963 Kb) Retrieve 5VPS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VPS from S2C, [Save to disk] Re-refined 5vps structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5VPS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vps] [5vps_A] SWISS-PROT database:

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