5VQ9 Protein Binding date May 08, 2017
title Structure Of Human Trip13, Apo Form
authors Q.Ye, K.D.Corbett
compound source
Molecule: Pachytene Checkpoint Protein 2 Homolog
Chain: D
Synonym: Human Papillomavirus Type 16 E1 Protein-Binding Pr Hpv16 E1 Protein-Binding Protein,Thyroid Hormone Receptor I 13,Thyroid Receptor-Interacting Protein 13,Trip-13;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trip13, Pch2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.199 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.964 96.964 122.646 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.02 Å
Gene
Ontology
ChainFunctionProcessComponent
D
  • transcription cofactor activ...


  • Primary referenceThe AAA+ ATPase TRIP13 remodels HORMA domains through N-terminal engagement and unfolding., Ye Q, Kim DH, Dereli I, Rosenberg SC, Hagemann G, Herzog F, Toth A, Cleveland DW, Corbett KD, EMBO J. 2017 Aug 15;36(16):2419-2434. doi: 10.15252/embj.201797291. Epub 2017 Jun, 28. PMID:28659378
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (5vq9.pdb1.gz) 125 Kb
  • CSU: Contacts of Structural Units for 5VQ9
  • Structure Factors (165 Kb)
  • Retrieve 5VQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VQ9 from S2C, [Save to disk]
  • Re-refined 5vq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5VQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VQ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vq9_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VQ9
  • Community annotation for 5VQ9 at PDBWiki (http://pdbwiki.org)

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