5VSX Chaperone date May 13, 2017
title Structure Of The Ubl Domain Of Sacsin
authors J.F.Trempe, H.Pande, S.Shenker, K.Gehring
compound source
Molecule: Sacsin
Chain: A, B
Fragment: Ubl Domain (Unp Residues 2-85)
Synonym: Dnaj Homolog Subfamily C Member 29,Dnajc29
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sacs, Kiaa0730
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex-6p1
symmetry Space Group: C 2 2 21
R_factor 0.187 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.901 62.606 90.834 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
Primary referenceStructures of Ubl and Hsp90-like domains of sacsin provide insight into pathological mutations., Menade M, Kozlov G, Trempe JF, Pande H, Shenker S, Wickremasinghe S, Li X, Hojjat H, Dicaire MJ, Brais B, McPherson PS, Wong MJH, Young JC, Gehring K, J Biol Chem. 2018 Jun 26. pii: RA118.003939. doi: 10.1074/jbc.RA118.003939. PMID:29945973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (5vsx.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (5vsx.pdb2.gz) 26 Kb
  • CSU: Contacts of Structural Units for 5VSX
  • Structure Factors (82 Kb)
  • Retrieve 5VSX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VSX from S2C, [Save to disk]
  • Re-refined 5vsx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5VSX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VSX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vsx_B] [5vsx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VSX
  • Community annotation for 5VSX at PDBWiki (http://pdbwiki.org)

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