5VWQ	Transferase	date	May 22, 2017
title	E.Coli Aspartate Aminotransferase-(1r,3s,4s)-3-Amino-4- Fluorocyclopentane-1-Carboxylic Acid (Fcp)
authors	R.Mascarenhas, H.Lehrer, D.Liu, D.Ringe
compound		source
Molecule: Aspartate Aminotransferase Chain: A, D, G, J Synonym: Aspat,Transaminase A Ec: 2.6.1.1 Engineered: Yes		Organism_scientific: Escherichia Coli K-12 Organism_taxid: 83333 Strain: K12 Gene: Aspc, B0928, Jw0911 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.162 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.897 84.904 88.029 118.83 90.10 89.59
method	X-Ray Diffraction	resolution	1.80 Å
ligand	PMP	enzyme	Transferase E.C.2.6.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, J, D, G
Primary reference	Selective Targeting by a Mechanism-based Inactivator against PLP-Dependent Enzymes: Mechanisms of Inactivation and Alternative Turnover., Mascarenhas R, Le HV, Clevenger KD, Lehrer HJ, Ringe D, Kelleher NL, Silverman RB, Liu D, Biochemistry. 2017 Aug 17. doi: 10.1021/acs.biochem.7b00499. PMID:28816437

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (607 Kb) [Save to disk] Biological Unit Coordinates (5vwq.pdb1.gz) 305 Kb Biological Unit Coordinates (5vwq.pdb2.gz) 300 Kb LPC: Ligand-Protein Contacts for 5VWQ CSU: Contacts of Structural Units for 5VWQ Structure Factors (4902 Kb) Retrieve 5VWQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VWQ from S2C, [Save to disk]

View 5VWQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VWQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vwq_A] [5vwq_D] [5vwq_J] [5vwq_G] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5VWQ

Community annotation for 5VWQ at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---