5VXA Hydrolase date May 23, 2017
title Structure Of The Human Mesh1-Nadph Complex
authors J.Rose, P.Zhou
compound source
Molecule: Guanosine-3',5'-Bis(Diphosphate) 3'-Pyrophosphohy Mesh1;
Chain: A, B
Synonym: Hd Domain-Containing Protein 3,Metazoan Spot Homol Mesh1,Penta-Phosphate Guanosine-3'-Pyrophosphohydrolase,(Pp
Ec: 3.1.7.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hddc3, Mesh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.165 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.780 80.370 114.460 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand BME, EDO, NA, NDP, TRS, ZN enzyme Hydrolase E.C.3.1.7.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (5vxa.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (5vxa.pdb2.gz) 64 Kb
  • Biological Unit Coordinates (5vxa.pdb3.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 5VXA
  • CSU: Contacts of Structural Units for 5VXA
  • Structure Factors (258 Kb)
  • Retrieve 5VXA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VXA from S2C, [Save to disk]
  • View 5VXA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VXA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vxa_A] [5vxa_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VXA
  • Community annotation for 5VXA at PDBWiki (http://pdbwiki.org)

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