OCA Atlas for 5VY3

5VY3

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
F, L, R, P, X, D, H, J, N, T, Z, 1, V, B
Y, W, I, Q, C, 0, U, G, M, E, O, A, S, K

Primary reference

Achieving better-than-3-A resolution by single-particle cryo-EM at 200 keV., Herzik MA Jr, Wu M, Lander GC, Nat Methods. 2017 Oct 9. doi: 10.1038/nmeth.4461. PMID:28991891

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8045 Kb) [Save to disk]

Biological Unit Coordinates (5vy3.pdb1.gz) 812 Kb

CSU: Contacts of Structural Units for 5VY3

Retrieve 5VY3 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5VY3 from S2C, [Save to disk]

View 5VY3 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vy3_0] [5vy3_1] [5vy3_A] [5vy3_B] [5vy3_C] [5vy3_D] [5vy3_E] [5vy3_F] [5vy3_G] [5vy3_H] [5vy3_I] [5vy3_J] [5vy3_K] [5vy3_L] [5vy3_M] [5vy3_N] [5vy3_O] [5vy3_P] [5vy3_Q] [5vy3_R] [5vy3_S] [5vy3_T] [5vy3_U] [5vy3_V] [5vy3_W] [5vy3_X] [5vy3_Y] [5vy3_Z]

SWISS-PROT database:

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